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docs(user_guide): fixes and suggestions on top of #1309 - #1310

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jan-glx wants to merge 7 commits into
scverse:fix/user_guidefrom
jan-glx:pr1309-user-guide-fixes
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jan-glx wants to merge 7 commits into
scverse:fix/user_guidefrom
jan-glx:pr1309-user-guide-fixes

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@jan-glx

@jan-glx jan-glx commented Nov 10, 2026

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Fixes and suggestions on top of #1309, details in my review there. Commits ordered from fixes to taste; cherry-pick freely.

…stion

- 'play around with existing data' is again an option of 'How do I create a SpatialData object?'
- the annotate and spatial-subset sub-questions are nested in their parent dropdowns again
- use nested dropdowns for all sub-cases (also replaces the tabs under 'create')
- replace the stale 'see the previous section ... below' with a {ref} link
…ial subset'

Avoids suggesting it belongs under 'Visualization and Analysis'.
Avoids a rename; the index card and quickstart still call it the User Guide.
@ajkswamy
ajkswamy deleted the branch scverse:fix/user_guide November 11, 2026 12:22
@ajkswamy ajkswamy closed this Nov 11, 2026
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